PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015891673.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family GRAS
Protein Properties Length: 166aa    MW: 18786.6 Da    PI: 8.4859
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015891673.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS64.42.3e-2056164265374
            GRAS 265 salfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgsl 358
                     sa+fd+le+ + +e+e r+ +E + l++ i+++va+eg+er+ r+ ++e Wr+ + +  + + +ls+ a+ q +l+ ++++ +   +ve + ++l
  XP_015891673.1  56 SAFFDCLENCV-KEEECRKAIEGV-LAEGIRDIVAKEGSERITRNVKMEVWRAFFARYKMVETKLSDAAMYQTSLVAKQFGcGSACNVERNGKCL 148
                     79******997.788999999998.9*******************************************************9999********** PP

            GRAS 359 vlgWkdrpLvsvSaWr 374
                     + gWk+ p+ s+S+W+
  XP_015891673.1 149 IAGWKGTPINSLSVWK 164
                     ***************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF035147.8E-1856164IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 166 aa     Download sequence    Send to blast
MFARRIEHPL CKLSGLAQGY GDKDHVNFHE VSSPSSSKLP HTEKLPPYTT WIFLDSAFFD  60
CLENCVKEEE CRKAIEGVLA EGIRDIVAKE GSERITRNVK MEVWRAFFAR YKMVETKLSD  120
AAMYQTSLVA KQFGCGSACN VERNGKCLIA GWKGTPINSL SVWKFR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015891673.11e-123PREDICTED: scarecrow-like protein 9
TrEMBLA0A0R0KPV62e-47A0A0R0KPV6_SOYBN; Uncharacterized protein
TrEMBLA0A151SJZ92e-47A0A151SJZ9_CAJCA; DELLA protein RGL1
TrEMBLK7K5W53e-47K7K5W5_SOYBN; Uncharacterized protein
STRINGGLYMA02G01530.28e-47(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47933162
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03450.11e-12RGA-like 2